YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.50
Transmembrane Helix	31	52	0.79
Non-Cytoplasmic	53	69	0.86
Transmembrane Helix	70	90	0.92
Cytoplasmic	91	99	0.90
Transmembrane Helix	100	123	0.93
Non-Cytoplasmic	124	129	0.90
Transmembrane Helix	130	154	0.88
Cytoplasmic	155	170	0.96
Transmembrane Helix	171	191	0.91
Non-Cytoplasmic	192	202	0.83
Transmembrane Helix	203	226	0.85
Cytoplasmic	227	232	0.91
Transmembrane Helix	233	251	0.89
Non-Cytoplasmic	252	258	0.64
Transmembrane Helix	259	278	0.88
Cytoplasmic	279	287	0.86
Transmembrane Helix	288	311	0.86
Non-Cytoplasmic	312	317	0.71
Transmembrane Helix	318	341	0.86
Cytoplasmic	342	355	0.84
Transmembrane Helix	356	379	0.84
Non-Cytoplasmic	380	390	0.83
Transmembrane Helix	391	415	0.81
Cytoplasmic	416	434	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYQILCIL SALALVTSVA SSRLHKLQET VAITALALGT SLLLLLGGKA LGGNVYGYFV  60
   61 AGLEKLDFQA LLLNGMLGFL LFAGALQIRL KILRHQKWEI LILAFVGTLL STFIVGGLLY 120
  121 YLAPMFGLPL ALSHCLLFGA LISPTDPIAV LAILKKMGAP EDIAIQVEGE SLFNDGIGLV 180
  181 IFVAISHLAF STEPLTFTQI SLLFVQEALG GVLYGAVLGL LLHHFFRYCE EETQLMLVTL 240
  241 LIPTAGYVMA AELGVSGPLA MVSAGIIIGN YSVPKFFARQ ERVKLYTFWS LIESFFNALL 300
  301 FLLLGLLLLL VTFKAPLWWF MLLAIPLVLT ARAVSVFLPY MGFRLVKSYN PYAESILIWG 360
  361 GLRGGLALAM AMSLPKGIII DSQPGVELHE LVLVMTYAVV VFSILIQGSS MTGLIRRSNA 420
  421 VVTRPDSHTT QESR