YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372907, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFVFFRYA QSPELPQWAV GSADLATLAI YMGIIFGSLH WMSNLIADFS AINRLPYIFS  60
   61 VIFKGLFLLL GATTLAYMTQ FLNMWAIENH MSTLRQMLTA HILYSPSFQA LIVYLVVVRV 120
  121 SLAFVEQMGL LVGPRILLNI GLGKYHKPRY EQRLFLYLDM VASTTHAESL GDYRFSRLIQ 180
  181 DSFSLLSDTV SNNEAEIYRY MGDAVLIHWP LEEGVVHDRC MNIYFEFSQQ LNWQRRYFEE 240
  241 HYGFVPKFKA AAHCGQVVAA VVGVQKQEIS FFSDVLNTLA RLQDQCNPMG QRMLISGALA 300
  301 GRLDNPDSAY RLTNLGPIKL KGKQHSIEVF GVSPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.50
Transmembrane Helix	18	42	0.84
Cytoplasmic	43	56	0.44
Transmembrane Helix	57	81	0.83
Non-Cytoplasmic	82	97	0.49
Transmembrane Helix	98	123	0.74
Cytoplasmic	124	335	0.57