YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372899, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSFYQQLV EIDGALFEGF LVLFFALLLA RLAPLPREMQ PLIWFSHLAK QLAAKVNRPG  60
   61 RAPSQQATAG FLAMLLLVFP FWAIITFLLE LAAFPWFFEF LVLYLCLSDA GFSQVADEIA 120
  121 KALNREDNAS AKKLLQPWVV RDTDNLSEVG LTKATIEKLA TAPIYGTAST IFFFAIAGAP 180
  181 MVLAVRMIKQ LELSWPPIQP KYQYFCRTVH TLSTALLAIP AWLWSLSIAI QGGPKALALL 240
  241 FRTSKNHPAL RGYVMSVSLV ANILRIELGG PQKFSGQRID VAKVVYGPQP HHEMIAPAIK 300
  301 LTSRACAIWF SFITLLPFIW AGLRWLQTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.84
Transmembrane Helix	14	35	0.89
Cytoplasmic	36	67	0.89
Transmembrane Helix	68	93	0.83
Non-Cytoplasmic	94	163	0.74
Transmembrane Helix	164	188	0.84
Cytoplasmic	189	205	0.72
Transmembrane Helix	206	228	0.80
Non-Cytoplasmic	229	248	0.67
Transmembrane Helix	249	268	0.67
Cytoplasmic	269	304	0.77
Transmembrane Helix	305	323	0.94
Non-Cytoplasmic	324	329	0.63