YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKSKLKWL KGRFWTISFP YAWLLLFFAL PFAIVFKISL STAAIAIPPY EATFQYADDV  60
   61 LNIFLHLGNY LMLLDDPLYY TAYLSSLKMA LVSTIGCLII GYPMAYAIAR APARWQTVLL 120
  121 LLVMLPSWTS FLIRVYAWMG ILSNTGIINN SLMWLGIISE PLQILNTNIA VYIGIIYAYL 180
  181 PFMILPLYAT LVKLDMSLIE AASDLGSSRI NTFWKITFPL SKSGVIAGSM LVFIPAVGEF 240
  241 VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLV LLIIPITLFH RYQARSLEKD 300
  301 L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	40	0.91
Non-Cytoplasmic	41	83	0.87
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	116	0.74
Transmembrane Helix	117	138	0.84
Non-Cytoplasmic	139	168	0.77
Transmembrane Helix	169	192	0.84
Cytoplasmic	193	217	0.91
Transmembrane Helix	218	242	0.79
Non-Cytoplasmic	243	267	0.93
Transmembrane Helix	268	289	0.93
Cytoplasmic	290	301	0.90