YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346821, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	42	0.92
Non-Cytoplasmic	43	52	0.76
Transmembrane Helix	53	71	0.89
Cytoplasmic	72	78	0.72
Transmembrane Helix	79	97	0.96
Non-Cytoplasmic	98	116	0.73
Transmembrane Helix	117	133	0.76
Cytoplasmic	134	142	0.70
Transmembrane Helix	143	161	0.82
Non-Cytoplasmic	162	182	0.56
Transmembrane Helix	183	206	0.89
Cytoplasmic	207	226	0.75
Transmembrane Helix	227	246	0.71
Non-Cytoplasmic	247	275	0.82
Transmembrane Helix	276	298	0.82
Cytoplasmic	299	308	0.82
Transmembrane Helix	309	333	0.81
Non-Cytoplasmic	334	341	0.74
Transmembrane Helix	342	364	0.88
Cytoplasmic	365	372	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNAMSAHQ RQNIWQRLHI DLPLLLGLLA VMGFGLFVIY SASGEDLGMM ERQLFRMFLS  60
   61 ICVMFTMAQI NPEALKRWAL PIYLAGVVLL LAVHFFGEIN KGAQRWLNLG FMEFQPSELI 120
  121 KLAFPITMAW YISKFPLPPK KRYLAGAGVI LLIPTLLIAK QPDLGTSILV AASGIFVLFL 180
  181 SGMSWAIVGG FIAAVLAFLP ILWYFLMHDY QRTRVLTLLD PEQDPLGAGY HIIQSKIAIG 240
  241 SGGLWGKGWL DGTQSQLEFI PERHTDFIFA VIGEEFGLIG SIILLLMYLY IIGRGLVIAS 300
  301 NAQTSFARLL AGSITLTFFV YVFVNIGMVS GILPVVGVPL PLVSYGGTSM LTLMTGFGIL 360
  361 MSIHTHRRFV DR