YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372728, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMNNNPKNT KQIVVAIQNI LEQRNTAGIT ALAKERHPAD IAAVLGSFTQ PQQLQFLQLV  60
   61 PAKFAADLFR YLSDELQAAL VQQLDKTTLS SLLLTMAADE RADLYNLLEP EQQKLLLPVL 120
  121 AQAKREDMRT LAAYDKTKVG AAMTSDYTLL NSRHTAAQAI EMLRTETADK ETIYQAYVVD 180
  181 MLGRLIGTVS LRQLLLALPE ERVVDFMKPN PIALDANALC QEAVQMIAHY DLLALPIING 240
  241 KGQLVGIVTY DDAMDIASSQ VDVEFTKNAA IGNIEHNLKT ASIGLLYRKR VTWLVILVFG 300
  301 NIFSGAGIAF FEDTIASYVS LVFFLPLLID SGGNAGSQSA TLMVRALATG EVILKDWVSL 360
  361 LGRELGVAGL LGASMALAVS LLGFWRGGPE IALVVALTMQ IVVIIGSLIG MSLPFLLSKL 420
  421 KMDPASASAP LITSIADIIG VLVYFSIATM ILDLPVV

Type	Start	End	Confidence
Cytoplasmic	1	290	0.98
Transmembrane Helix	291	311	0.94
Non-Cytoplasmic	312	320	0.69
Transmembrane Helix	321	344	0.72
Cytoplasmic	345	364	0.77
Transmembrane Helix	365	385	0.93
Non-Cytoplasmic	386	392	0.77
Transmembrane Helix	393	417	0.88
Cytoplasmic	418	428	0.84
Transmembrane Helix	429	452	0.86
Non-Cytoplasmic	453	457	0.86