YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLESLALHH GYESEATTKA AAVPIYQTTS YTFDDTQHGA DLFDLKVAGN IYTRIMNPTT  60
   61 SVLEQRLAAI EGGIGALAVA SGMAAITYAI QALTQVGDNI VSTSQLYGGT YNLFAHTLPR 120
  121 QGVEVRMAAF DDFEELEALI DAKTKALFCE SIGNPAGNIV DLKRLAEIAH KHGVPLIVDN 180
  181 TVATPVLCRP FEHGADIVIH SLTKYIGGHG TTIGGIIIDS GKFDWVANKE RFSLLNQADP 240
  241 SYHGVVYTEA FGPAAFIGRC RVVPLRNTGA ALSPHSAFLL LQGLETLSLR MERHCANALA 300
  301 LAEYLILHPS VSWVNYGALP SSPFRENCEK ITGGKASGII SFGIKAATPE EGKIAGGKFI 360
  361 DALKMVLRLV NIGDAKSLAC HPASTTHRQL DANELARAGV SEDLIRISVG IEHIDDIIAD 420
  421 VSQALEKALV

Type	Start	End	Confidence
Cytoplasmic	1	71	0.57
Transmembrane Helix	72	90	0.56
Non-Cytoplasmic	91	430	0.96