YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	29	0.88
Non-Cytoplasmic	30	35	0.62
Transmembrane Helix	36	55	0.90
Cytoplasmic	56	80	0.90
Transmembrane Helix	81	101	0.89
Non-Cytoplasmic	102	121	0.82
Transmembrane Helix	122	142	0.94
Cytoplasmic	143	148	0.87
Transmembrane Helix	149	170	0.88
Non-Cytoplasmic	171	186	0.75
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	219	0.88
Transmembrane Helix	220	243	0.87
Non-Cytoplasmic	244	276	0.91
Transmembrane Helix	277	298	0.90
Cytoplasmic	299	307	0.90
Transmembrane Helix	308	329	0.86
Non-Cytoplasmic	330	334	0.74
Transmembrane Helix	335	357	0.90
Cytoplasmic	358	368	0.86
Transmembrane Helix	369	392	0.89
Non-Cytoplasmic	393	395	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKMLGSIA IVAGTAIGAG MLALPLATAA LGMVPAILLM VVIWGLSAYT SLLMLEINLR  60
   61 SGVGDNVHAI TGKLLGKKGQ IVQGASFLSL LVALTAAYLT GGSSLLVLKA QNMFDIVLDN 120
  121 QLAVVLFTIV LGGFAALGVA WVDKVSRFLF SLMILLLIVV VLFLLPEVSI STIATSAVAQ 180
  181 SLTSSWMAAI PVVFTSFGFH VCIATLVRYL DGDTVSLRKV LLIGSTIPLA CYIFWLLVTL 240
  241 GTVGGNEING FNGSLPALIS ALQEIAHTPL ISKCISLFAD LALITSFLGV TLSLYDFVAE 300
  301 LTRAKKTFVG RAQTWLLTFV PPLLCALYVP EGFVAVLGFA AVPLVVMIIF LPIAMALRQR 360
  361 QIQPQGYQVV GGTFALGLAG ILGAIIIGAQ LFVAL