YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.68
Transmembrane Helix	21	44	0.74
Non-Cytoplasmic	45	87	0.64
Transmembrane Helix	88	109	0.90
Cytoplasmic	110	116	0.57
Transmembrane Helix	117	149	0.74
Non-Cytoplasmic	150	167	0.51
Transmembrane Helix	168	191	0.87
Cytoplasmic	192	198	0.67
Transmembrane Helix	199	220	0.91
Non-Cytoplasmic	221	238	0.66
Transmembrane Helix	239	261	0.91
Cytoplasmic	262	289	0.71
Transmembrane Helix	290	314	0.88
Non-Cytoplasmic	315	326	0.60
Transmembrane Helix	327	345	0.86
Cytoplasmic	346	354	0.50
Transmembrane Helix	355	373	0.93
Non-Cytoplasmic	374	380	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRLKLITL LTPIFTPLTR QQWLMLALVG FTLLTPIAAA SFGAANISFL DVFNVFIDKF  60
   61 SQLFMGENAP STAAMTDRIV MELRLPRILL AFVAGAGLSL AGSVLQTVTR NPLADPYLFG 120
  121 ISSGASFGAV VMLTLFSGSG FFANAGVIAN SGIFSGAEIL AGLQWFSLPF GAFIGASLSV 180
  181 LIVLALSGLG LNSQVERMLL SGVATSFMFG ALTSLLLYFA SPQATASVLF WSLGSFAKAS 240
  241 WSLLILPTIV VLVSFFIILG WKRQIMALQA GDETAHTLGV NVPKLRLNML LLCSLITAIL 300
  301 VATCGGIGFV GLMIPHTVRL LFPGRQPILL TALVGGLFMV WIDVLARCLL GNQELPVGII 360
  361 TASIGSFFFL LILRRRKVAS