YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372592, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDDKPELT TAPSQAIPQE AFDWYDEYAH GIIDRREFMM RLAGLVALGF TLSTLTGALM  60
   61 PNYALAEQVS FNDPTIQASY VKFPSPEGYG EGRGYLVLPS ALLIPGQKAG DPKTLDPTKK 120
  121 APVVLVVHEN RGLNPYIEDV ARRLAAKGYI AFAPDALYSL GGYPGNDDAG RAMQASLDRA 180
  181 KIEQDFIAAA RFLKSHPQSN GKLGAVGFCF GGYIVNMLAA IIPDELAAGV PFYGTPAVTE 240
  241 LRSRVKGPLM LQFAALDQRI NDTWAEYEAQ LKANKADYAA YLYPNVNHGF HNDSTARYDE 300
  301 PTAELAWART LDFFGKHLLV

Type	Start	End	Confidence
Cytoplasmic	1	41	0.93
Transmembrane Helix	42	64	0.86
Non-Cytoplasmic	65	320	0.93