YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346608, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	29	0.87
Non-Cytoplasmic	30	35	0.78
Transmembrane Helix	36	57	0.91
Cytoplasmic	58	70	0.87
Transmembrane Helix	71	93	0.89
Non-Cytoplasmic	94	105	0.87
Transmembrane Helix	106	127	0.93
Cytoplasmic	128	138	0.85
Transmembrane Helix	139	160	0.90
Non-Cytoplasmic	161	171	0.82
Transmembrane Helix	172	190	0.95
Cytoplasmic	191	217	0.94
Transmembrane Helix	218	239	0.90
Non-Cytoplasmic	240	248	0.75
Transmembrane Helix	249	273	0.79
Cytoplasmic	274	286	0.82
Transmembrane Helix	287	307	0.96
Non-Cytoplasmic	308	314	0.77
Transmembrane Helix	315	335	0.87
Cytoplasmic	336	343	0.73
Transmembrane Helix	344	362	0.92
Non-Cytoplasmic	363	365	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFIKDEFA LLLGILTLVF FKTGGDSLLA DGTALSTYIP VSLALLGVVT WAIFSVVRHS  60
   61 DALAIKLGDP YGTLILTLSV ISLEVVMISS VMLTGEPNPV MARDTMFAVV MIITNGLVGF 120
  121 TLLLGGWRYH TQHFNLDGVK SYLVAIIPLA LLCLVLPNFT EGGTVGGMSK PMSWMLIIIS 180
  181 ILLYGIFLVV QTKSHSHFFV DADNEDHEEH HGILRSNIYH TLLLIGYLLV VILLAKTLAM 240
  241 PINYSVASLG APPALGGFVV ACLILSPEAV GGFKAALNNQ LQRAMNLYFG SVLATIALTV 300
  301 PAVLIVGSVI NQEVHLGLSA ADMVLLATTL MVCKVSFSSG RTNALHGATH LVLFIVYLFL 360
  361 MFEHA