YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.97
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	37	0.80
Transmembrane Helix	38	59	0.95
Cytoplasmic	60	68	0.80
Transmembrane Helix	69	91	0.90
Non-Cytoplasmic	92	124	0.93
Transmembrane Helix	125	145	0.91
Cytoplasmic	146	153	0.83
Transmembrane Helix	154	175	0.90
Non-Cytoplasmic	176	197	0.88
Transmembrane Helix	198	217	0.90
Cytoplasmic	218	230	0.92
Transmembrane Helix	231	255	0.85
Non-Cytoplasmic	256	283	0.88
Transmembrane Helix	284	306	0.90
Cytoplasmic	307	316	0.89
Transmembrane Helix	317	338	0.91
Non-Cytoplasmic	339	345	0.69
Transmembrane Helix	346	366	0.92
Cytoplasmic	367	373	0.82
Transmembrane Helix	374	396	0.80
Non-Cytoplasmic	397	434	0.89
Transmembrane Helix	435	456	0.89
Cytoplasmic	457	462	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGDTLGLG FMTFAFFLGA GNLIFPPFAG MLAGENMLLA MLGFLITAVG LPLVGLIAVA  60
   61 KAQGKVMAML PVFAATALAI AIYIIIGPAF AAPRTGLVAY EIGAKPFIDN TTATIMLGSL 120
  121 SLNLSQLIYT LGFFIVTMLL ALFPGKLLDS VGKVLTPILL LLLVGLALSV LFLPASEVGV 180
  181 AVGDYKNHPL TKGILEGYNT MDTLASLMFG MLIIDLLRKK GIEQPSAQTK YLIRAAFIAA 240
  241 AGLAFVYVSL FFLGATAGDI AAGAKNGGEI LTNYVTREFG SLGTVLLSAV VTLACLTTAV 300
  301 GLVSACSEFF NELMPKLSYR FLVVALSAIC ALIANVGLSQ LINISIPVLM AVYPVAIALV 360
  361 AVTFLTEYFP RPQFAHRAAL SVALLFGIFD GMKVAAKSLT GEDGRGITEF AQSFIDFVNG 420
  421 MSPTLSILPL YEEGMAWLLP TLVVIVLCLI IRGSGAKTVS AA