YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346527, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.81
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	31	0.92
Transmembrane Helix	32	50	0.95
Cytoplasmic	51	61	0.82
Transmembrane Helix	62	80	0.94
Non-Cytoplasmic	81	94	0.86
Transmembrane Helix	95	115	0.82
Cytoplasmic	116	126	0.79
Transmembrane Helix	127	149	0.78
Non-Cytoplasmic	150	154	0.52
Transmembrane Helix	155	171	0.85
Cytoplasmic	172	178	0.71
Transmembrane Helix	179	198	0.90
Non-Cytoplasmic	199	217	0.84
Transmembrane Helix	218	238	0.95
Cytoplasmic	239	258	0.83
Transmembrane Helix	259	277	0.95
Non-Cytoplasmic	278	281	0.78
Transmembrane Helix	282	299	0.91
Cytoplasmic	300	345	0.90
Transmembrane Helix	346	368	0.92
Non-Cytoplasmic	369	379	0.86
Transmembrane Helix	380	402	0.82
Cytoplasmic	403	412	0.69
Transmembrane Helix	413	437	0.89
Non-Cytoplasmic	438	450	0.75
Transmembrane Helix	451	472	0.90
Cytoplasmic	473	476	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLCCVAIL SGFSPAVWAM TEGGERLDLT AATVGYIAVC VFVLAYLLVM AEETLHLRKS  60
   61 KPVLVAAGII WGMIGFVYVQ NGMSEVSETA FKHNLLEYAE LLLFLLVAMT YINAMEERNL 120
  121 FDAIRGWLVG RGFSLRTVFW LTGFMAFFIS PVADNLTTAL LMCAVVMKVG AGQRKFITLA 180
  181 CINIVVAANA GGTFSPFGDI TTLMVWQKGL VHFADFFYLF IPALVNFALP AAIMSIFIPH 240
  241 YVPQPEKEQV YTKPGAKRIV ALFLLTIATA VCAHSFLGMP PVLGMMTGLG FLQFFGYYLR 300
  301 KTFDRSVARE RAKAELRQDE QRLLQLGSVV PFDVFSRISR AEWDTLLFFY GVVLCVGGLG 360
  361 FMGYLSLVSE ALYSNWDATY ANVAIGLLSS VVDNIPVMFA VLTMNPEMAL GQWLLVTLTA 420
  421 GVGGSLLSIG SAAGVALMGQ ARGIYTFGAH LRWTPVIALG YVASILVHMW LNAAMF