YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346508, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	50	0.93
Non-Cytoplasmic	51	55	0.80
Transmembrane Helix	56	75	0.93
Cytoplasmic	76	107	0.92
Transmembrane Helix	108	127	0.92
Non-Cytoplasmic	128	144	0.83
Transmembrane Helix	145	164	0.92
Cytoplasmic	165	173	0.77
Transmembrane Helix	174	192	0.96
Non-Cytoplasmic	193	206	0.88
Transmembrane Helix	207	229	0.86
Cytoplasmic	230	249	0.92
Transmembrane Helix	250	272	0.87
Non-Cytoplasmic	273	303	0.89
Transmembrane Helix	304	325	0.89
Cytoplasmic	326	347	0.93
Transmembrane Helix	348	366	0.94
Non-Cytoplasmic	367	373	0.75
Transmembrane Helix	374	396	0.87
Cytoplasmic	397	407	0.87
Transmembrane Helix	408	429	0.92
Non-Cytoplasmic	430	430	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKDAISVLE TPQSTQESTT RRLPWTRQDT TWMLSLFGTA VGAGILFLPI NAGMGGFWPL  60
   61 VLMAIIIGPM TYLAHRGLSR FVCSSSIPGS DITQVVEEHF GIGAGKAITL LYFLAIYPIV 120
  121 LIYGVGITNT VDSFIVNQLG MASPPRFLLS GILIFGMMAV MVAGEQFMLK VTQLLVYPLV 180
  181 GILAFMSVYL IPEWKMDALQ VVPETGAFLG TVWLTIPVLV FAFNHSPAIS QFSVSLKRDH 240
  241 GANAARKADV ILRNTSMMLV GFVMLFVFSC VLSLSPEQLA EAKAKNLPIL SYLANVHDSG 300
  301 FVSYFGPFIA FIAIVSSFFG HYMGATEGMK GIIVKQLRSS KKQVSEDKLN KFILVFMFAT 360
  361 IWGVAIKNPS ILGMIEALGG PVIAAILYLM PMYAVYKVPA LKAYRHRISN VFVVIAGLLA 420
  421 MTAILFGLLS