YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO0754
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTLYFEGP IDKLNWHVIK LLWPYLLEYK GRVALAMSCL IVAKLASVGL PFILKDVVDT  60
   61 LDANKTAQTL SVPIGLVLAY GAVRLLTVIT GEIRDTLFGR VTERAIRRLG LAVFDHLHRL 120
  121 DLDFHLERRT GGLSRDIERG TSGVSFLMRF MVFNIVPTLL EIAMVIGIFF FNYGVAFASI 180
  181 TFISVLAYIW FSVIATEWRT EYVRDAAKAD SLSNTRAIDS LLNYETVKYF NNEKYESERY 240
  241 DQALDQWEVA KRKNRLSLFA LNGGQALIIA IAMTAMMALA AYKVTHNEMT LGDFVLINAF 300
  301 MMQLFMPLNF LGFVYREIRG ALANIERMFS LLDKHPSIVD KPDALDFEPK RGELSFENVS 360
  361 FSYDDRPILR NVSFKVAAGK KVAVVGDSGA GKSTLIKLLF RFYDVEQGRI LIDGQDIRQL 420
  421 TQDALRRAIA IVPQDTVLFN DSLVENIRYG RPNASDDDVR HAIKLAHLED FIASLSQGWD 480
  481 TKVGERGLKL SGGEKQRVAI ARAILKGSPV LVFDEATSSL DSRSEQAILS ALREVAKGHT 540
  541 SLVVAHRLST IVDADQIVVL SKGEIVEQGN HSSLLAQDGL YAKLWRIQNE QQHLSV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.92
Transmembrane Helix	33	54	0.78
Non-Cytoplasmic	55	68	0.75
Transmembrane Helix	69	88	0.74
Cytoplasmic	89	145	0.94
Transmembrane Helix	146	169	0.85
Non-Cytoplasmic	170	174	0.67
Transmembrane Helix	175	194	0.93
Cytoplasmic	195	257	0.97
Transmembrane Helix	258	281	0.90
Non-Cytoplasmic	282	293	0.83
Transmembrane Helix	294	315	0.88
Cytoplasmic	316	596	0.98