YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372286, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.80
Transmembrane Helix	15	39	0.79
Non-Cytoplasmic	40	45	0.89
Transmembrane Helix	46	66	0.89
Cytoplasmic	67	78	0.80
Transmembrane Helix	79	100	0.87
Non-Cytoplasmic	101	112	0.70
Transmembrane Helix	113	133	0.90
Cytoplasmic	134	141	0.93
Transmembrane Helix	142	164	0.92
Non-Cytoplasmic	165	168	0.92
Transmembrane Helix	169	188	0.89
Cytoplasmic	189	195	0.83
Transmembrane Helix	196	216	0.90
Non-Cytoplasmic	217	222	0.68
Transmembrane Helix	223	237	0.90
Cytoplasmic	238	246	0.77
Transmembrane Helix	247	267	0.89
Non-Cytoplasmic	268	272	0.84
Transmembrane Helix	273	295	0.91
Cytoplasmic	296	305	0.89
Transmembrane Helix	306	326	0.89
Non-Cytoplasmic	327	334	0.73
Transmembrane Helix	335	358	0.90
Cytoplasmic	359	547	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAILIITL ICGMLVSRIG LPPLIGYLVA GFVLFVMGIE KESMPLLQEL ANLGVTLLLF  60
   61 AIGLKLDIRS LFKAEVWAGS SVHLILSILV FVPILKILGL LGLSQLTSLG IEQLTLLAFA 120
  121 LSFSSTVFAV KVLEDKGDMQ SLYGRVAIGI LIMQDIFAVL FLTISKGDVP SVWAFALLLL 180
  181 PLAKPLIYKA FDRVGHGELL VLFGLVMALV VGAWLFESLG LKPDLGALVI GILLAGHKKA 240
  241 SELAKSLFYF KELFLVAFFL TIGLNGLPTV SDIVLAALLV LLVPLKILLF VYILTRFKLR 300
  301 SRTSMLGSFN LGNFSEFGLI VAAVATSKGW LPSHWLVIIA VALSFSFLLA APLNATVGSI 360
  361 YQRFQLRLVR LEKRPLHPED RPIAIGNPRF LILGMGRIGS GAYDELRARF DGEILGIEHK 420
  421 QDLVDLHRAK GRNVVQGDAS DTDFWEKLDK APNLELVLLA MPHHAGNLFA VEQLNKLNYQ 480
  481 GKISAIVQYG EDAASLRNSG VHSVYNLYEA AGAGFVDHVV HELLPDSETK AGTEAQEGTQ 540
  541 KQTSSLV