YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346127, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISIRTKLSL WLTGLLVLGT VIGLILFESM LRQAFHDSII NRLEEDLEHI MLATHFNNGE  60
   61 IHIDQSQLSS FYRPAYSGRY FQLNLPNEVI RSRSLWDMQL DIEPLAPSQT RVWQAKGPKN 120
  121 NDMQLLSLGL NSSSANVTAT LTVAQDLSIG RRVFSEVYGT KLGVNLAMLV AMIAGIFLIL 180
  181 RQSFKPVKQI QHALSRLQEG EIKALELNNI PPEVQPLAKT YNELLEYTAK QIERSRNNLG 240
  241 NLSHGLKTPL AVMQQQVEAL GLKDPETAMA LQQQLDAIHK MVERKLAAAR ITGDMLPAAQ 300
  301 LVVPRDLHSL ANTLNKVHRS KNISCNFELD PSIQRLPIHR EDGMELLGNL LDNAFKWADS 360
  361 QVTVKLWKAQ NKLYLSIDDD GPGVADDELD KLTQRGTRLD ESVMGHGLGL SIVKEIAEQY 420
  421 GIELKFTHSR RLSGLCIELV LS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.47
Transmembrane Helix	8	27	0.70
Non-Cytoplasmic	28	129	0.71
Transmembrane Helix	130	144	0.24
Cytoplasmic	145	156	0.44
Transmembrane Helix	157	180	0.70
Non-Cytoplasmic	181	442	0.71