YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372082, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTLIQAVA VKEFKDNLRN RWLWLMAGML LILSLCVSFM GSAVSGSLVV SESAQIFSGL  60
   61 VTLAVFILPL GAILLSYDSF VGERESGTLL LLLTYPLARW HLVCGKLLGH AYVIATACLL 120
  121 GFGLTALLLV ALGEAHARLT LVTGFIHLIG SGILLSLVFV LLGYCVSLCV REKAKALGVL 180
  181 LLLWFVLVLV YDLVLLTALV SMAEVLSRHL FNLLILINPT DLFRALNLLA NPADSLSAKS 240
  241 SLALIAQSGM GIPLMYGLFV GWLAVLSLIC CFIFNRQEV

Type	Start	End	Confidence
Cytoplasmic	1	21	0.94
Transmembrane Helix	22	44	0.93
Non-Cytoplasmic	45	55	0.77
Transmembrane Helix	56	77	0.91
Cytoplasmic	78	107	0.86
Transmembrane Helix	108	132	0.89
Non-Cytoplasmic	133	144	0.79
Transmembrane Helix	145	168	0.90
Cytoplasmic	169	178	0.78
Transmembrane Helix	179	201	0.90
Non-Cytoplasmic	202	251	0.89
Transmembrane Helix	252	274	0.91
Cytoplasmic	275	279	0.83