YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345959, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTLGLSQG VAWPWPIAVY LFFAGISGGA LTIALALRFY LGQVENTAFL KAATLLSFVT  60
   61 ISLGMLCLVL DLTNPLFFWR ILVFYNLNSV MSIGVIALSV YIPLVAVVAL LALEKELMAI 120
  121 PQLKFLAPII AKLKGFRRPM EALALVLALS VCAYTGFLIS ALIRFPLINT SVLPALFIAS 180
  181 GLSAGGASAK MLAVWLFKEP LHSGEMKILH GAEWPIMFAE AMFIFMIATA LLTGNAGGQF 240
  241 AFAAFHEGVW ASVFWIGVVG IGFAAPLLLN FATGKHFSHS AKAFYMSGMC AVVGMMCLRL 300
  301 FILLAGQNYA I

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	41	0.89
Cytoplasmic	42	51	0.79
Transmembrane Helix	52	72	0.92
Non-Cytoplasmic	73	89	0.85
Transmembrane Helix	90	113	0.90
Cytoplasmic	114	141	0.96
Transmembrane Helix	142	163	0.94
Non-Cytoplasmic	164	172	0.75
Transmembrane Helix	173	194	0.93
Cytoplasmic	195	213	0.87
Transmembrane Helix	214	234	0.88
Non-Cytoplasmic	235	250	0.76
Transmembrane Helix	251	272	0.93
Cytoplasmic	273	282	0.88
Transmembrane Helix	283	305	0.92
Non-Cytoplasmic	306	311	0.92