YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFSLLVAI LVERLKFLPA AWQCDRVLQS YQSTFFGDKA SLNNTNMLLA LILPAVVVYL  60
   61 LGWIVSDMFW GLLNLALWVL VAIICFNHQK QRDTFKKYMQ AACRSDVQAC YHYAAELDCS 120
  121 ECLNAVSEKD LGAKVGQSVA WINYRYYGAV ALLLIFLGPV GAALYCTARF YAEENIRKSL 180
  181 NLPLIEDIMF VLDWIPSRIF SFGYALSGQF SEGLSAWRDN ALNVHTSARQ VVTATALASQ 240
  241 PLPEVSSAPV CVQSTLALLV LSKRNFTLMV AVLSLLTIFG LVS

Type	Start	End	Confidence
Cytoplasmic	1	44	0.92
Transmembrane Helix	45	63	0.92
Non-Cytoplasmic	64	68	0.62
Transmembrane Helix	69	89	0.70
Cytoplasmic	90	145	0.67
Transmembrane Helix	146	168	0.84
Non-Cytoplasmic	169	189	0.58
Transmembrane Helix	190	208	0.43
Cytoplasmic	209	263	0.67
Transmembrane Helix	264	282	0.75
Non-Cytoplasmic	283	283	0.76