YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFFTLLGH TFDQAPWLFI SLSFVFAATI GSFLNVVIHR FPVMMKREWQ QECNQYLQEY  60
   61 HADIVKQVGI DKLSKAIDHY PPKYNLVVPG SACPKCKTAI KPWHNLPMLG WLMLRGKCAA 120
  121 CSAPISARYP IIELITGLLV ATLAWHFGPS WQFVFAAILT FVLIALTGID LDEMLLPDQM 180
  181 TLPLLWLGLL INLNHTFTSP ADAMIGAAAG YLSLWSIFWL FKLLTGKEGM GYGDFKLLAV 240
  241 FGAWLGWQML PLVILLSSLV GAFVGITLIV TKRNQLANPI PFGPYIAAAG WIALIWGQPI 300
  301 VDWYLSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	38	0.96
Cytoplasmic	39	124	0.96
Transmembrane Helix	125	147	0.66
Non-Cytoplasmic	148	150	0.62
Transmembrane Helix	151	171	0.86
Cytoplasmic	172	186	0.52
Transmembrane Helix	187	221	0.72
Non-Cytoplasmic	222	246	0.56
Transmembrane Helix	247	270	0.87
Cytoplasmic	271	279	0.63
Transmembrane Helix	280	300	0.87
Non-Cytoplasmic	301	308	0.68