YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345851, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKLSIKKW SAWLDLSQSV SGVILAVFLW THLVLVSSIL LGGDAMHWVA RTMELSFLSS  60
   61 DGRGFPWVVT CIAIGIAALA LVHVLVALQK LPMSLRQQRA LQQQMQVINH SDTRLWRWQV 120
  121 ITGVVILLLL PVHLWLIGSA PETIGPQGSA DRIWNQGVWM VYLPLLLTVE LHAAIGIYRV 180
  181 ALKWGAALDL NSRSRLRKIK TIVSVAFVTV GLASLLAFLP YAS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	42	0.89
Non-Cytoplasmic	43	64	0.93
Transmembrane Helix	65	87	0.94
Cytoplasmic	88	114	0.96
Transmembrane Helix	115	137	0.91
Non-Cytoplasmic	138	157	0.95
Transmembrane Helix	158	182	0.88
Cytoplasmic	183	200	0.94
Transmembrane Helix	201	221	0.94
Non-Cytoplasmic	222	223	0.82