YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371992, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVTRVHTR VKTQGIGHPW SAKADRLQSA TGIMLGCFLL LHMHFESSIL LGKEAFYQVV  60
   61 QLLEGGMFSS TGHGFPMVTK VFSVFMLLVV ILHAAVALRR FPAQLGQWRA LRSHLGCINH 120
  121 RDTHAWFWQL ITGFILFFLV PVHLFTMILN PEIGPHLSAE RVYHDNAWLL YALLLPAVVI 180
  181 HAMIGLYRVA VKWGITAQRS GLRKLAKVLI IYLLCLGSAS LVAYMLIGSE LSIPVQPYVP 240
  241 Q

Type	Start	End	Confidence
Cytoplasmic	1	26	0.91
Transmembrane Helix	27	45	0.89
Non-Cytoplasmic	46	76	0.84
Transmembrane Helix	77	102	0.81
Cytoplasmic	103	124	0.96
Transmembrane Helix	125	147	0.92
Non-Cytoplasmic	148	166	0.95
Transmembrane Helix	167	189	0.91
Cytoplasmic	190	207	0.91
Transmembrane Helix	208	228	0.95
Non-Cytoplasmic	229	241	0.95