YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371952, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.70
Transmembrane Helix	5	25	0.71
Cytoplasmic	26	31	0.65
Transmembrane Helix	32	51	0.85
Non-Cytoplasmic	52	66	0.75
Transmembrane Helix	67	90	0.88
Cytoplasmic	91	99	0.88
Transmembrane Helix	100	119	0.89
Non-Cytoplasmic	120	124	0.83
Transmembrane Helix	125	145	0.93
Cytoplasmic	146	164	0.94
Transmembrane Helix	165	186	0.95
Non-Cytoplasmic	187	200	0.72
Transmembrane Helix	201	223	0.84
Cytoplasmic	224	232	0.84
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	263	0.75
Transmembrane Helix	264	285	0.90
Cytoplasmic	286	292	0.86
Transmembrane Helix	293	312	0.69
Non-Cytoplasmic	313	316	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIALSIIGG FLILTLGAEA LVRGATTIAL RLGITPLVIG LTIVAFGTSA PELAVSVKAA  60
   61 LAGNSGIALG NVIGSNIVNI GLILGITALI RPIEVKSEMV KRDIPIMILA SMLFWGLLLD 120
  121 GELSLIDGVI LLSFMLGYLV FSYFSAKNTN DADGEVIEEG PKNPLLSLLF IAVGISMLVG 180
  181 GGILFVNGAV DLAKVFGVSE IIIGLTIVAI GTSMPELVTS VLAALKGQSD IAIGNIVGSN 240
  241 IFNILGILGV TAIVYPVSGL GFQSLDFIVM LAFAVVILPF AWTGLRIGRR EGATLLIAYL 300
  301 GYLIYLVNQA STQAVV