YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTPLQLEQ KLAWVYLINL VFYLIPLFIT PYSSWQIILI LAVLVPFIYC YFWTYRCNFR  60
   61 SAYRPIIAML VLATVVTPIN PGSISLFTFA SFFIGFFYPI RVSVFCWFGV VVLLFLLNYL 120
  121 NQFNNLYFPL YGTLLVLGVG MLGVAERRRY HHKLKEQQSA QEISTLATMV ERERIARDLH 180
  181 DIMGHSLSSI ALKAELAEKL LAKQEYQLAT TQLQELGQIA RESLSQIRHT VCDYKHKGLA 240
  241 SCITQLCHSL RDKGIYVELI GELPKLPARA ESQLGLILTE LVNNILRHSS ASQCSITFRE 300
  301 QENTLFVEVK DNASASPFIE GNGLTGIRER LDSLGGHFSY NLEQGYAFTV SLPLQGATV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	30	0.93
Non-Cytoplasmic	31	36	0.71
Transmembrane Helix	37	55	0.95
Cytoplasmic	56	65	0.80
Transmembrane Helix	66	89	0.83
Non-Cytoplasmic	90	96	0.66
Transmembrane Helix	97	117	0.88
Cytoplasmic	118	125	0.65
Transmembrane Helix	126	145	0.93
Non-Cytoplasmic	146	359	0.82