YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371911, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	40	0.68
Transmembrane Helix	41	62	0.90
Cytoplasmic	63	88	0.92
Transmembrane Helix	89	112	0.89
Non-Cytoplasmic	113	118	0.81
Transmembrane Helix	119	141	0.90
Cytoplasmic	142	150	0.83
Transmembrane Helix	151	171	0.95
Non-Cytoplasmic	172	186	0.93
Transmembrane Helix	187	209	0.85
Cytoplasmic	210	223	0.87
Transmembrane Helix	224	247	0.86
Non-Cytoplasmic	248	270	0.89
Transmembrane Helix	271	293	0.89
Cytoplasmic	294	319	0.92
Transmembrane Helix	320	341	0.90
Non-Cytoplasmic	342	349	0.82
Transmembrane Helix	350	373	0.89
Cytoplasmic	374	383	0.89
Transmembrane Helix	384	403	0.92
Non-Cytoplasmic	404	408	0.83
Transmembrane Helix	409	428	0.93
Cytoplasmic	429	439	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSENKIGV VQLTIITIVN MMGSGIIMLP TQLAQVGTIS VLSWLVTAAG STALAFAFAK  60
   61 CGMFSKKSGG MGGYAEYAFG RSGNFMANYT YAVSLLIANV AIAISAVGYA AVLLEVNLSP 120
  121 MAICLATIGV LWLATVANFG GARITGRVSS VTVWGIILPV IGVSLIGWFW FDIDLYKGAW 180
  181 NPHDMPFFKA LGGSIAMTLW AFLGLESACA NSEAVDNPEK NVPIAVMGGT LGAALIYIVS 240
  241 TNVIAGIVPN AELASSNAPF GLAFAQMFNP VVGKIVMACA IISCTGSLLG WQFTIAQVFK 300
  301 ASADEGFFPK VFAKVSKADA PIWGMTIIVS IQTLLSLMTI SPSLSKQFEA LVNLAVVTNI 360
  361 VPYILSMAAL GVMQKQLKVP ANKARVANVI AVIGALYSFY ALYSSGETAV MLGAIATFFG 420
  421 WTIYGVISNK TPSVEIKAA