YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345681, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	39	0.84
Transmembrane Helix	40	62	0.91
Non-Cytoplasmic	63	94	0.87
Transmembrane Helix	95	113	0.88
Cytoplasmic	114	120	0.81
Transmembrane Helix	121	143	0.90
Non-Cytoplasmic	144	175	0.93
Transmembrane Helix	176	199	0.87
Cytoplasmic	200	209	0.89
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	246	0.91
Transmembrane Helix	247	264	0.95
Cytoplasmic	265	273	0.84
Transmembrane Helix	274	293	0.95
Non-Cytoplasmic	294	310	0.83
Transmembrane Helix	311	331	0.95
Cytoplasmic	332	350	0.93
Transmembrane Helix	351	374	0.92
Non-Cytoplasmic	375	391	0.87
Transmembrane Helix	392	411	0.95
Cytoplasmic	412	423	0.86
Transmembrane Helix	424	443	0.94
Non-Cytoplasmic	444	448	0.79
Transmembrane Helix	449	471	0.89
Cytoplasmic	472	489	0.92
Transmembrane Helix	490	510	0.92
Non-Cytoplasmic	511	614	0.96
Transmembrane Helix	615	634	0.92
Cytoplasmic	635	659	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGHFSL IIGVAFAFLL TSVPLIGVAR KDQYLVRYAW PLAYGMFFFI ALSVVSLGYS  60
   61 FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV 120
  121 FTARVLAVLA LIVIGFSLFM LLTSSPFERI FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY 180
  181 VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWVFLTG GIALGSWWAY YELGWGGWWF 240
  241 WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS 300
  301 VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV 360
  361 AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFAFMGVGPI IRWKKSKAGE 420
  421 LKRQLLVPAL VSLVIGIVTP FIVDGAFNAW VACGIAAAAW IILATAKAAY SIVKPKDGEV 480
  481 SIARMGRSQL GMIIAHLGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN 540
  541 VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI 600
  601 SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ