YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAD PERAYKLSGT LFPWFAILAC LFITVGTVWG LLFAPTDYQQ GDSYRIIFIH  60
   61 VPAASMSMAA YMGMATAAFI GLVWQVKLAD WAAASIAPIG AVITFIALFT GATWGKPMWG 120
  121 TWWVWDARLT SELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW 180
  181 SSLHQPSTIR ITEKSTMSSE MLYPLLINIL GFGLMIGAIT IVRFRAEILA RNGMRPWVRE 240
  241 LAKAEEVK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.95
Non-Cytoplasmic	44	58	0.91
Transmembrane Helix	59	84	0.84
Cytoplasmic	85	90	0.85
Transmembrane Helix	91	113	0.89
Non-Cytoplasmic	114	126	0.84
Transmembrane Helix	127	147	0.89
Cytoplasmic	148	153	0.82
Transmembrane Helix	154	173	0.93
Non-Cytoplasmic	174	204	0.89
Transmembrane Helix	205	224	0.96
Cytoplasmic	225	248	0.95