YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371797, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPPIIWLN VILFSLTFLS AVILVPWYGI VYGYGASEWI AFVVLAFASG LSITAGYHRL  60
   61 WSHKAYKTHP AIRFLYALGG ALALQNSALH WASDHRVHHK HVDDNDKDPY SAKMGFWYSH 120
  121 IGWMLREYQA QRYHDYQNVR DLQNDRIVMW QHKHYLTLVL LMNIGLPALL GWFTGNIAGM 180
  181 LLMAGLLRLV VVHHCTFFIN SLAHVWGCQP YTDKNTARDN GFLAVLTYGE GYHNFHHIFE 240
  241 NDYRNGIKWW HYDPTKWLIK SLSWVGLAKD LRTSPQERIE SARLQMQLLH AKNKVLNLPN 300
  301 ADEIIEKIQQ EYELMKQHLL EYYQAQKTLL EAKRKQLVDQ QLLQQVEELK TRFLNQQKSW 360
  361 KSLTATYS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	30	0.91
Non-Cytoplasmic	31	38	0.82
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	71	0.91
Transmembrane Helix	72	92	0.66
Non-Cytoplasmic	93	157	0.69
Transmembrane Helix	158	192	0.70
Cytoplasmic	193	368	0.65