YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345547, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	42	0.71
Transmembrane Helix	43	65	0.88
Cytoplasmic	66	75	0.83
Transmembrane Helix	76	100	0.87
Non-Cytoplasmic	101	144	0.95
Transmembrane Helix	145	165	0.88
Cytoplasmic	166	184	0.80
Transmembrane Helix	185	206	0.90
Non-Cytoplasmic	207	222	0.87
Transmembrane Helix	223	243	0.94
Cytoplasmic	244	262	0.84
Transmembrane Helix	263	279	0.51
Non-Cytoplasmic	280	293	0.47
Transmembrane Helix	294	315	0.71
Cytoplasmic	316	326	0.52
Transmembrane Helix	327	347	0.80
Non-Cytoplasmic	348	353	0.63
Transmembrane Helix	354	376	0.89
Cytoplasmic	377	412	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKSLLGNI GVQVVIAMII GALVGFMMGE SASIFAPLGT IFIHLIKMLV IPLVLVSIIS  60
   61 GAASLGDSPS AGKIGVGTFG FFIITSGLAV ALALVMGSIF TPGAGVDFTA HSSSDLMEVT 120
  121 KEHGALPGVI DTFIGMIPTN VFESLNGGNI LQILVFSIFF GIALTKVKGD GAKPIMAALN 180
  181 TVVDAFVWMI NCVMVIAPIG VFGLMADSVG TFGFDALEVV FKLFAVFVAA ILIYGFVFFP 240
  241 LVVQLFSKVS ARQFISAMKK PQVMALSTAS SMATLPVNME TCEEDLKVSK ATTAFVLPLG 300
  301 ATINMSGNAI YYGLVAMFFA QMYNIDLSMT AYAAIIFTST LGAIGQAGVP GPSFLVVAVL 360
  361 LAAGIPIDGL PLLFALDRVF DMIRTALNIT GDAACAVIMD KYTAEQLTQE PS