YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371660, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFANTASIN HYWRTHPALF TAMLLVVVLI TSYFIDVFSG SAIAVLLILQ LAVVVVALQC  60
   61 SANYAYFVAV FGAVSFNFLF TAPRYSLQML NVEDIVNLTV FLLAALTSSK LAKHYRRQQD 120
  121 ALEQAQLRNS ILLSVSHDLR TPLATIIGTL TTLKEYQPKL SPAQTEELID SAAAESHRLH 180
  181 QYIENLLQAN KLQHGALKFS LDEANIREVL QRTIARFQTE QPRIQIQSEP ELPSLMICSS 240
  241 LIEQAIFNVL DNALHYSPAT QPVTVSLYRH QHMLRIDIQD QGKGIAPSQT GAIFELFYRQ 300
  301 HPTTDGGAGL GLPVAKGIIT AHNGTISAEK VAHGSLIRIA LPITKESA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.78
Transmembrane Helix	12	35	0.82
Non-Cytoplasmic	36	39	0.51
Transmembrane Helix	40	58	0.84
Cytoplasmic	59	63	0.53
Transmembrane Helix	64	82	0.85
Non-Cytoplasmic	83	94	0.58
Transmembrane Helix	95	112	0.49
Cytoplasmic	113	348	0.53