YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345384, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	29	0.93
Non-Cytoplasmic	30	36	0.83
Transmembrane Helix	37	58	0.91
Cytoplasmic	59	70	0.90
Transmembrane Helix	71	92	0.90
Non-Cytoplasmic	93	131	0.87
Transmembrane Helix	132	155	0.86
Cytoplasmic	156	181	0.81
Transmembrane Helix	182	201	0.95
Non-Cytoplasmic	202	233	0.76
Transmembrane Helix	234	256	0.89
Cytoplasmic	257	268	0.77
Transmembrane Helix	269	289	0.91
Non-Cytoplasmic	290	324	0.79
Transmembrane Helix	325	351	0.80
Cytoplasmic	352	390	0.96
Transmembrane Helix	391	412	0.93
Non-Cytoplasmic	413	421	0.75
Transmembrane Helix	422	444	0.78
Cytoplasmic	445	452	0.73
Transmembrane Helix	453	474	0.86
Non-Cytoplasmic	475	480	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNFRALLFI LGLFLSMLTA FMFAPMLVAV VNGEETVGSF MLSALATGIC ASLCLHNGQS  60
   61 KGINLNIRDM FLLTSLTWLI VSLFAAMPFT LYHGIGYTDA FFETMSGITT TGSTVLVGLD 120
  121 TMDHSILIWR SLLQWLGGIG FIVMAVAILP FLNVGGMRLF RTESSDWSDK AVPRTQSMAK 180
  181 HLFFIYILLT IICSVAYHLA GMTWFQAINH AMTTLSTGGY STSDSSMAAF SNSAHWVGVV 240
  241 FMAAGGLPLL MFVQMIQQRD VKVWNDAQVK GFLFFLTFVS CSIGFWLWQT RDIALIDALR 300
  301 LSSFNVVSVV TTTGYGLTDY GAWGAFANIA FLFLMFVGSC SGSTSGGIKI FRFQIAGAIM 360
  361 REQLKQQCHP NGIFRERYNN RLITEDIVRS LITFVLLYMF VIVGLSVILV LTGLDPVTSF 420
  421 TGAITAVSNV GPGLGPIIGP VGNFSTLPDL AKWALSLGML LGRLEILTVA VLFHPSFWKY 480
  481