YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28628306
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPSPSPSS PSGIAESDGG RGGRTERLLD SQEDEGNASW RLNVKEFTLK NNHENNRNGG  60
   61 NSNRAHRTLT FLRRPKKQRK VAEYYKKQER LLEGFNEMDT MAETGFFPGS LTEDEMKQLA 120
  121 KGERMAVTVS NACNLVLFGA KVFASFESRS LAVIASTMDS LLDLLSGFIL WFTAHAMKTP 180
  181 NRFHYPIGKK RMQPVGIIVF ASVMATLGLQ ILIESARELI NKTKPETDPK KLNWMIGIMA 240
  241 SVTVVKFILM IYCRRFKNEI VRAYAQDHFF DVITNSVGLA AAVLAVKFYW WLDPTGAIII 300
  301 ALYTINTWTR TVYENVRSLI GRTAPPDFLA KLTYLIWNHH EQVKHIDTVR AYTFGAHYFV 360
  361 EVDIVLPEDM LLNQAHNIGE TLQEKLEQLP EVERAFVHID FEFTHRPEHK TMV

Type	Start	End	Confidence
Cytoplasmic	1	124	0.86
Transmembrane Helix	125	144	0.75
Non-Cytoplasmic	145	151	0.77
Transmembrane Helix	152	174	0.90
Cytoplasmic	175	193	0.87
Transmembrane Helix	194	213	0.96
Non-Cytoplasmic	214	233	0.86
Transmembrane Helix	234	253	0.93
Cytoplasmic	254	268	0.82
Transmembrane Helix	269	291	0.76
Non-Cytoplasmic	292	294	0.59
Transmembrane Helix	295	312	0.67
Cytoplasmic	313	413	0.79