YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194426828, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRIHHNKRK INVSLHRVIN IFYTKKDRNV FTGLNIIILL FITKTADNPS FPRQLALWSD  60
   61 GFCNKSHNKK FQHTDYLGKN MRKITQAISA VCLLFALNSS AVALASSPSP LNPGTNVARL 120
  121 AEQAPIHWVS VAQIENSLAG RPPMAVGFDI DDTVLFSSPG FWRGKKTFSP ESEDYLKNPV 180
  181 FWEKMNNGWD EFSIPKEVAR QLIDMHVRRG DAIFFVTGRS PTKTETVSKT LADNFHIPAT 240
  241 NMNPVIFAGD KPGQNTKSQW LQDKNIRIFY GDSDNDITAA RDVGARGIRI LRASNSTYKP 300
  301 LPQAGAFGEE VIVNSEY

Type	Start	End	Confidence
Cytoplasmic	1	86	0.70
Transmembrane Helix	87	105	0.69
Non-Cytoplasmic	106	317	0.98