YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110804997, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKYKPMKK NIFKFSVLTL AVLSLTACTL VPGQNLSTSN KDVIELPDNQ YDLDKMVNIY  60
   61 PVTPGLIDQL RAKPIMSQAN PELEQQIANY EYRIGIGDVL MVTVWDHPEL TTPAGQYRSA 120
  121 SDTGNWVNAD GAIFYPYIGR LKVAGKTLTQ VRNEITARLD SVIESPQVDV SVAAFRSQKA 180
  181 YVTGEVSKSG QQPITNIPLT IMDAINAAGG LTADADWRNV VLTQNGVKTK VNLYALMQRG 240
  241 DLRQNKLLHP GDILFIPRND DLKVFVMGEV GKQSTLKMDR SGMTLAEALG NAEGMNQDVA 300
  301 DATGIFVIRA TQNKQNGKIA NIYQLNAKDA SAMILGTEFQ LEPYDIVYVT TAPLARWNRV 360
  361 ISLLVPTISG VHDLTETSRW IQTWPN

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	386	0.99