YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24112312, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFKIYFYL DNQIVTPYLH KNHASYGPIS QARYDLYQFL IYNALLVSRR RLNKERVSVK  60
   61 ADNPFDLLLP AAMAKVAEEA GVYKATKHPL KTFYLAITAG VFISIAFVFY ITATTGTGTM 120
  121 PFGMAKLVGG ICFSLGLILC VVCGADLFTS TVLIVVAKAS GRITWCQLAK NWLNVYFGNL 180
  181 VGALLFVLLM WLSGEYMTAN GQWGLNVLQT ADHKVHHTFI EAVCLGILAN LMVCLAVWMS 240
  241 YSGRSLMDKA FIMVLPVAMF VASGFEHSIA NMFMIPMGIV IRDFASPEFW TAVGSAPENF 300
  301 SHLTVMNFIT DNLIPVTIGN IIGGGLLVGL TYWVIYLREN DHH

Type	Start	End	Confidence
Cytoplasmic	1	92	0.98
Transmembrane Helix	93	113	0.96
Non-Cytoplasmic	114	130	0.79
Transmembrane Helix	131	156	0.89
Cytoplasmic	157	171	0.94
Transmembrane Helix	172	194	0.91
Non-Cytoplasmic	195	217	0.92
Transmembrane Helix	218	239	0.94
Cytoplasmic	240	249	0.83
Transmembrane Helix	250	270	0.91
Non-Cytoplasmic	271	312	0.93
Transmembrane Helix	313	336	0.91
Cytoplasmic	337	343	0.93