YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24111918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR  60
   61 IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD IREQKRLMVL RASVALHGRS 120
  121 VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL 180
  181 SRVRGKVQYA DLGAENWKPI SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK 240
  241 NQRSTRTHCH HPSPKIYSAS AKEPWILATN LPVEIRTPEQ LVNIYSKRMQ IEETFRDLKS 300
  301 PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS 360
  361 TVRLGMEVLR HSGYTITRED SLVAATLLTQ NLFTHGYVLG KL

Type	Start	End	Confidence
Non-Cytoplasmic	1	317	0.78
Transmembrane Helix	318	337	0.73
Cytoplasmic	338	402	0.60