YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|225851980, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPFPPFEP NGRVDASRGP KLSQIPLRIV VPNVITVLAI CAGLTGIRLA FENRFELAVA  60
   61 MVLLAAFLDG IDGRIARMIK GSSKFGAQMD SLADIVNFGV APALVLYAFM LDQARSFGWI 120
  121 AALLYAIACC LRLARFNVML EDPNRPAWQN NYFIGVPAPA GAMLVLLPVY LGFLGLMPTR 180
  181 ALAFGVAAYT VAIAFLLVSR LPVYNGKSAG SLVRRDIVMP LILCVVIYVA LLMSFTWQTL 240
  241 SLTALAYLAF LPFSLAAWNK REAADRKKAA EEASSGDN

Type	Start	End	Confidence
Cytoplasmic	1	28	0.94
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	56	0.74
Transmembrane Helix	57	76	0.90
Cytoplasmic	77	90	0.90
Transmembrane Helix	91	111	0.91
Non-Cytoplasmic	112	116	0.89
Transmembrane Helix	117	136	0.94
Cytoplasmic	137	151	0.87
Transmembrane Helix	152	174	0.91
Non-Cytoplasmic	175	180	0.83
Transmembrane Helix	181	203	0.89
Cytoplasmic	204	216	0.77
Transmembrane Helix	217	232	0.97
Non-Cytoplasmic	233	239	0.61
Transmembrane Helix	240	259	0.89
Cytoplasmic	260	278	0.94