YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|161337401, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPSKANGQ IVRKRSRFFL GFMAVLGAAF FLLFVGLGIW QVERLQWKLD LIARVDARVH  60
   61 ADPVAAPGKD EWAHINRKDD EYRHVTLTGT YLNDKEILVH ALTERGSGYW VLTPMRSDAG 120
  121 VLIFINRGFV PGEKRDAASR AQTQIAGETT VTGLLRMPEP GGFFLRPNDP SRDDWNSRDI 180
  181 AAFAEKENLG PVAPYFIDAD AQSNPGNLPV GGLTVVKFRN SHLSYAITWF ALAAMVAGAA 240
  241 IFVWRHERRS SNM

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	40	0.93
Non-Cytoplasmic	41	224	0.97
Transmembrane Helix	225	244	0.97
Cytoplasmic	245	253	0.88