YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163675059, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	39	0.94
Non-Cytoplasmic	40	59	0.84
Transmembrane Helix	60	78	0.93
Cytoplasmic	79	90	0.81
Transmembrane Helix	91	110	0.95
Non-Cytoplasmic	111	117	0.79
Transmembrane Helix	118	141	0.90
Cytoplasmic	142	150	0.88
Transmembrane Helix	151	172	0.92
Non-Cytoplasmic	173	186	0.89
Transmembrane Helix	187	207	0.95
Cytoplasmic	208	249	0.96
Transmembrane Helix	250	269	0.93
Non-Cytoplasmic	270	284	0.80
Transmembrane Helix	285	306	0.93
Cytoplasmic	307	316	0.89
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	342	0.75
Transmembrane Helix	343	363	0.92
Cytoplasmic	364	370	0.72
Transmembrane Helix	371	391	0.88
Non-Cytoplasmic	392	406	0.79
Transmembrane Helix	407	428	0.91
Cytoplasmic	429	433	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSNTAITS PEVVENMTYR KVAFRIIPLL MICYIIAYLD RVNVGFAKLQ MSEELGFSEA  60
   61 IYGLGAGLFF IGYFFFEIPS NILLHKLGAR LWIARIMITW GLLSALFAFV QTEWQFYILR 120
  121 FLLGAAEAGF YPGVILYLTY WFPSHRRGKM FALFQAGSPA AGIFGNPLSG WIMDQFHDTA 180
  181 GWQGWQWMFV LEAIPAVVLG VVILLYLDNS VKAAKWLTEE EKAIISRDIE ADSKGKAASH 240
  241 SLMSLVKNPM LWVMTLIYFC FVMGQYGLTL WMPTLIRASG VTSNVTIGLL GAIPFICAII 300
  301 AMVIFSRSAD HYRERRWHLV VPALLGAVGF VVAASATNTT VSIIFLSMAA AGVLACAPLF 360
  361 WSLPTAILSG AAAAAGIALI NSVANLAGFI SPYMVGIIRD ATHSSELGMY VLAGFLILGA 420
  421 AIVLCIPASK VNR