YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62391655, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPLRVAVI GAGPAGIYAS DLLIRNEERE VFVDLFEQMP APFGLIRYGV APDHPRIKGI  60
   61 VKSLHNVLDK PRLRLLGNIE IGKDITVEEL RDYYDAVVFS TGAVADRDLN IPGIEAEGSF 120
  121 GAGEFVGFYD GNPRFERSWD LSAQSVAVIG VGNVGLDVAR ILAKTGDELK VTEISDNVYD 180
  181 SLKENKATEV HVFGRRGPAQ VKFTPQELKE LDHSPTINVV VDPEDIDYDG ASEEARRASK 240
  241 SQDLVCQILE QYAIREPKDA PHTLQIHLFE NPVEVLQKDG KVVGLRTERT SLDGNGGVNG 300
  301 TGEFKDWPVQ AVYRAVGYKS DPIDGVPFDE NKHVIPNDGG HVLTAPGAEP VPGLYATGWI 360
  361 KRGPIGLIGN TKSDAKETTD ILIKDAVAGV LEAPKHQGEE AIIELLDSRN IPFTTWEGWY 420
  421 KLDAAERALG EAEGRERKKI VDWEEMVRQA REAPAIV

Type	Start	End	Confidence
Signal Peptide	1	19	0.60
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	457	0.99