YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41326541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	63	0.83
Non-Cytoplasmic	64	70	0.76
Transmembrane Helix	71	92	0.89
Cytoplasmic	93	99	0.83
Transmembrane Helix	100	121	0.90
Non-Cytoplasmic	122	130	0.75
Transmembrane Helix	131	152	0.89
Cytoplasmic	153	157	0.79
Transmembrane Helix	158	180	0.86
Non-Cytoplasmic	181	190	0.83
Transmembrane Helix	191	209	0.89
Cytoplasmic	210	215	0.68
Transmembrane Helix	216	237	0.89
Non-Cytoplasmic	238	264	0.88
Transmembrane Helix	265	289	0.83
Cytoplasmic	290	342	0.74
Transmembrane Helix	343	364	0.88
Non-Cytoplasmic	365	370	0.47
Transmembrane Helix	371	393	0.84
Cytoplasmic	394	401	0.57
Transmembrane Helix	402	423	0.81
Non-Cytoplasmic	424	431	0.54
Transmembrane Helix	432	453	0.93
Cytoplasmic	454	659	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKFHIEDEG TTPNAVTTST TTRVKHPVDQ VPPAPKLAAL GLQHVLAFYA GAVIVPLLIA  60
   61 QSLNLDTATT IHLINADLLT CGIATLIQSV GIGRHIGVRL PIVQGVTTTA VAPIIAIGLG 120
  121 VTDGQGGVAS LPAIYGAVIV SGIFTFFAAP VFARFLKFFP PVVTGTVLLV MGASLLSVSA 180
  181 NDFVNYADGV PAARDLAYGF GTLAVIILAQ RFFRGFMGTL AVLIGLVGGT AVALILGDAN 240
  241 LDEVGNAEAF DITTPFYFGV PEFNAVAIFS MIIVMIITMV ETTGDVFATG EIVGKRTRRS 300
  301 DVTRALRADG LSTLMGGVMN SFPYTCFAQN VGLVRITGVK SRWVAAAAAG FMIILGVLPK 360
  361 AGAIVASIPS PVLGGASLAL FANVAWVGIQ TIAKSDLADS RNSVIVTSAL GLAMLVSFRP 420
  421 DVAQAFPEWA RIFVSSGMSV GAITAILLNL LFFHVGRQSG GQVATSKSGE RINLDAVNKM 480
  481 DRTDFVETFA PLFNSKTWPL ETAWESQPFA NVTELREAIQ VAVLTAPLSD REELIHDYPD 540
  541 MAQLILATEE EAATISQDRG SIGLDDLDDV DQEKLITVTE QYRERFNMPY VAYFDTMDSV 600
  601 DTVVAAGLRR LDNSDEQEHR QALSEIIEIA NDRFDILLAD ANPARSAFDR KFTETDFLG