YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62390074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFETFLWV AYPWLCIAAY IIGISWRWRA DQFGWTTHSS QIYESKLLRI ASPLFHWGMV  60
   61 FVVIGHLMGL AIPKSWTQAV GISDAAYHLI ATIPGTIAGI AAVLGLIGLI IRRVINKTVF 120
  121 LSTSRSDKVM YVLLGAAILS GFIATVSTQV FGGAHGYDYR ETISPWLRQL LIFNAQPELM 180
  181 ADVPWEFKVH IVAGFTLIAL WPFTRLVHAF SAPVGYVTRP YVVYRTRDTT SEPARQNVAW 240
  241 EPIRSVKNQL DNDSKWHGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	28	0.93
Cytoplasmic	29	49	0.91
Transmembrane Helix	50	72	0.86
Non-Cytoplasmic	73	88	0.86
Transmembrane Helix	89	111	0.93
Cytoplasmic	112	128	0.95
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	188	0.93
Transmembrane Helix	189	209	0.84
Cytoplasmic	210	259	0.95