YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62389279, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	69	0.89
Non-Cytoplasmic	70	83	0.82
Transmembrane Helix	84	104	0.92
Cytoplasmic	105	113	0.85
Transmembrane Helix	114	133	0.97
Non-Cytoplasmic	134	139	0.79
Transmembrane Helix	140	162	0.87
Cytoplasmic	163	172	0.85
Transmembrane Helix	173	195	0.91
Non-Cytoplasmic	196	203	0.85
Transmembrane Helix	204	225	0.92
Cytoplasmic	226	234	0.87
Transmembrane Helix	235	256	0.93
Non-Cytoplasmic	257	263	0.83
Transmembrane Helix	264	285	0.94
Cytoplasmic	286	303	0.93
Transmembrane Helix	304	325	0.94
Non-Cytoplasmic	326	339	0.89
Transmembrane Helix	340	362	0.90
Cytoplasmic	363	369	0.89
Transmembrane Helix	370	390	0.93
Non-Cytoplasmic	391	397	0.72
Transmembrane Helix	398	420	0.91
Cytoplasmic	421	437	0.89
Transmembrane Helix	438	457	0.94
Non-Cytoplasmic	458	517	0.95
Transmembrane Helix	518	539	0.92
Cytoplasmic	540	549	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQVKPDDE RPVTTISKSG APSAHTSAPY GAAATEEAVE EKTKGRVGFI IAALMLAMLL  60
   61 SSLGQTIFGS ALPTIVGELG GVNHMTWVIT AFLLGQTISL PIFGKLGDQF GRKYLFMFAI 120
  121 ALFVVGSIIG ALAQNMTTLI VARALQGIAG GGLMILSQAI TADVTTARER AKYMGIMGSV 180
  181 FGLSSILGPL LGGWFTDGPG WRWGLWLNVP IGIIALVAIA VLLKLPARER GKVSVDWLGS 240
  241 IFMAIATTAF VLAVTWGGNE YEWASPMIIG LFITTLVAAI VFVFVEKRAV DPLVPMGLFS 300
  301 NRNFVLTAVA GIGVGLFMMG TIAYMPTYLQ MVHGLNPTQA GLMLIPMMIG LIGTSTVVGN 360
  361 IVSKTGKYKW YPFIGMLIMV LALVLLSTLT PSASLALIGL YFFVFGFGLG CAMQILVLIV 420
  421 QNSFPITMVG TATGSNNFFR QIGGAVGSAL IGGLFISNLS DRFTENVPAA VASMGEEGAQ 480
  481 YASAMSDFSG ASNLTPHLVE SLPQALREAI QLSYNDALTP IFLALTPIAV VAAILLFFIR 540
  541 EDHLKETHE