YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62389268, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRNPDREA IRHGKITTEA LRERPAYPTW AMKLTMAITG LMFGGFVLVH MIGNLKIFMP  60
   61 DYAADSAHPG EAQVDVYGEF LREIGSPILP HGSVLWILRI ILLVALVLHI YCAFALTGRS 120
  121 HQSRGKFRRT NLVGGFNSFA TRSMLVTGIV LLAFIIFHIL DLTMGVAPAA PTSFEHGEVY 180
  181 ANMVASFSRW PVAIWYIIAN LVLFVHLSHG IWLAVSDLGI TGRRWRAILL AVAYIVPALV 240
  241 LIGNITIPFA IAVGWIA

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	52	0.90
Non-Cytoplasmic	53	94	0.97
Transmembrane Helix	95	118	0.93
Cytoplasmic	119	137	0.94
Transmembrane Helix	138	160	0.90
Non-Cytoplasmic	161	191	0.95
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	227	0.84
Transmembrane Helix	228	252	0.88
Non-Cytoplasmic	253	257	0.82