YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23100928, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNKRGFQL NEKQLGYAMV LPSLILVCIV VLWPVAQSFY NSLFDYRLND PNRSELMLSA  60
   61 NIDLERYVDN QFYLDNQLED LTMQVDSDAG AKIEEMKEGI NHHHEQLLSD EETKQKVEKV 120
  121 DELLMNYQPV TDSELKYQKI DSDFADRYRE ELLQYQASLM EIAESTADET LSQSIEQTAD 180
  181 LTGATGETIL QSNFIGLKNY GKYLQDNRMW GALWNTTFFT VITVALELVI GVCIALLINR 240
  241 AFKGRGIIRA SVLIPWAIPT AVAAMMWGFL FDGQSGIVAH YLEALHIIPD ASWLLSTSDG 300
  301 GMFSIILADV WKTTPYMALL ILAGLQTIPE SLYEASDVDG ANKFQQFWKI TLPLLKSSIL 360
  361 VALLFRTLDA FRVFDLIYVL TGGGPANATE SISVYAYKTL FAQQNFGEGS VLSVIVFLFV 420
  421 AIISFIYVKL IGSDLFAGRT K

Type	Start	End	Confidence
Cytoplasmic	1	14	0.92
Transmembrane Helix	15	36	0.88
Non-Cytoplasmic	37	216	0.99
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	249	0.79
Transmembrane Helix	250	271	0.90
Non-Cytoplasmic	272	290	0.83
Transmembrane Helix	291	311	0.64
Cytoplasmic	312	351	0.65
Transmembrane Helix	352	370	0.62
Non-Cytoplasmic	371	409	0.63
Transmembrane Helix	410	431	0.92
Cytoplasmic	432	441	0.84