YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23100522, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPTEHIET PQTAHKPPNP RLKSWKIVFN KFKKNKSAMI GGFLIIFLLI IAIVGPFFTP  60
   61 YEPYEQNIVN KLQSPSAEHW FGTDNFGRDI FSRVIQGTGL TLTIGFFSIA LGATMGVLFG 120
  121 LLAGFYGKRT DSIIMRIMDI LLAFPGILLA LAIVTVLGGS IANLIIAVAV SSIPVFARIV 180
  181 RGSVLSVKNL EYIDAMRALG ASDTRIIFKH IFPNITSPII VQATLSIATA ILSASGLSFL 240
  241 GLGAQPPSAE WGAMLSDGRN YLYNAGHVAL FPGLAIVVAV LAFNLLGDGL RDAFDPKTKE 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	59	0.91
Non-Cytoplasmic	60	101	0.96
Transmembrane Helix	102	126	0.88
Cytoplasmic	127	136	0.78
Transmembrane Helix	137	156	0.89
Non-Cytoplasmic	157	160	0.63
Transmembrane Helix	161	180	0.85
Cytoplasmic	181	218	0.81
Transmembrane Helix	219	244	0.82
Non-Cytoplasmic	245	264	0.82
Transmembrane Helix	265	287	0.90
Cytoplasmic	288	300	0.84