YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23100313, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNIQKRTLV TATLLLASVL LFIQPVTNIF VNASSGDGSS SSPYTVTQAI NNQDNSTKSV  60
   61 EGYIVGQPIS TTSVITSNFP NNYAFALADS PSATNIEEMV YVQIPSSFRS SFGLQSNPSL 120
  121 LGEKVKVTGT LTNYFAHAGV KNGTAFELQN DDTQPPDPDP ETPELDGYYD DADGKTGEQL 180
  181 KSTLHDIIDD HTEISYSNVW EALRETDEDP RNSNNVLLLY TGRSQGKNDN GGNADDWNRE 240
  241 HVWAKSHGDF GTSMGPGTDI HHLRPTDASV NSSRSNLDFD DGGSEHSEAD GNYYDSDSWE 300
  301 PRDSVKGDVA RMIFYMDVRY EGDSGELDLE LNDQVNNGSA PYHGKLSVLL EWHEEDPVDD 360
  361 FERRRNDIIF NDYQHNRNPF IDHPEWVGEI WE

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	392	0.99