YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22778245, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDPSEPQNH EKKEKKYNKH NPTVAMILSI LFAGLGQLYN RRFLKGISFM VIEIAFIITS  60
   61 LETINFGLWG LRTLGTIPGT DHSIRLLVLG VLSLIVTIIV ITLYVFNVID ARKQAKKVRS 120
  121 GWKPLKFRQS IKEIYDYSFP YLMTFPGLIL MIFVVIFPLL FSILLAFTNY DLYNSPPRNL 180
  181 VDWVGLDNFK NLFTVPIWQD TFLSVFSWTI VWTVVATTLQ IALGFFLAVL VNDPRVKFKK 240
  241 LIRTILILPW AVPAFVTILV FAAMFNDDFG AINRDIIIPL FGGEGIAWLS DPFYSRIAII 300
  301 MIQTWLGFPF IFALITGILQ SVSKDWYEAA DIDGASRFQK FKNITFPHVM FAVAPLLIMQ 360
  361 YAQNFNNFNI IYLFNEGGPP VRGQNAGGTD ILISWVYKLT FDTNNYSMAA VISIIMGLIV 420
  421 SAFAFYQFRK TRSFKEEGEI

Type	Start	End	Confidence
Cytoplasmic	1	46	0.65
Transmembrane Helix	47	69	0.82
Non-Cytoplasmic	70	85	0.86
Transmembrane Helix	86	108	0.93
Cytoplasmic	109	141	0.92
Transmembrane Helix	142	167	0.83
Non-Cytoplasmic	168	207	0.94
Transmembrane Helix	208	231	0.91
Cytoplasmic	232	243	0.86
Transmembrane Helix	244	265	0.91
Non-Cytoplasmic	266	296	0.94
Transmembrane Helix	297	319	0.89
Cytoplasmic	320	343	0.89
Transmembrane Helix	344	363	0.92
Non-Cytoplasmic	364	405	0.96
Transmembrane Helix	406	426	0.94
Cytoplasmic	427	440	0.92