YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22778235, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.89
Transmembrane Helix	19	38	0.94
Non-Cytoplasmic	39	55	0.90
Transmembrane Helix	56	79	0.85
Cytoplasmic	80	95	0.88
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	145	0.79
Transmembrane Helix	146	168	0.86
Cytoplasmic	169	180	0.81
Transmembrane Helix	181	200	0.87
Non-Cytoplasmic	201	244	0.85
Transmembrane Helix	245	264	0.92
Cytoplasmic	265	271	0.65
Transmembrane Helix	272	290	0.90
Non-Cytoplasmic	291	305	0.80
Transmembrane Helix	306	334	0.71
Cytoplasmic	335	340	0.68
Transmembrane Helix	341	363	0.84
Non-Cytoplasmic	364	394	0.72
Transmembrane Helix	395	412	0.73
Cytoplasmic	413	418	0.69
Transmembrane Helix	419	440	0.91
Non-Cytoplasmic	441	441	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVTSFFDR MVQRYLPDAF LFAIILTIIV FFIGLLFPDN GPLEMVQFWG NGFWGLLEFA  60
   61 MQMSLVVITG YILASTNVVK RFLSRLSKLA NTPAQAIILV TFIALIACFI NYGFGLVVGA 120
  121 LFATHVAKQV PSVDYRLLIA SAYSGFLIWH GGFSGSVPLT IATAGHFLEG QVGIIPITET 180
  181 LFSPYNLFIV ITLLVALPLF NRYLLNGIAD NNTYFAEKIQ QTEQKPNVDA NSIPTTPAEK 240
  241 LENSPIVSMI IGILGLSFIV YYFVTNGFNL NINIVNFIFL FLGIILHRTP RQFLDNVSQG 300
  301 VKNAGAIIIQ FPFYAGIMGM MVDSGISEAL SLWFVNISTE YTLPFLSFIS AGIVNFFIPS 360
  361 GGGQWAIQGP IMIESALELG ADTAKTAMGI AWGDAWTNMI QPFWALPALA IAGLKVRDIM 420
  421 GFCVMILIFS FIPISIGLLF F